clustering.cpp File Reference

Wrapper for clustering package. More...

#include "config.hpp"
#include "density_clustering.hpp"
#include "mpp.hpp"
#include "network_builder.hpp"
#include "state_filter.hpp"
#include "coring.hpp"
#include "noise.hpp"
#include "logger.hpp"
#include "tools.hpp"
#include <omp.h>
#include <time.h>
#include <boost/program_options.hpp>

Include dependency graph for clustering.cpp:

Go to the source code of this file.

Functions
int	main (int argc, char *argv[])
	Parses option and execute corresponding sub-module. More...

Detailed Description

Wrapper for clustering package.

The main function of clustering is essentially being a wrapper around the different sub-modules: density, network, mpp, coring, noise and filter.

See also

main()

Definition in file clustering.cpp.

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

Parses option and execute corresponding sub-module.

This method parses the arguments and calls the corresponding sub-modules.

Parameters

density	for density-based clustering on the given geometric space
network	for the network/microstate generation from density-based clustering results
mpp	for Most Probable Path clustering of microstates
coring	for boundary corrections of clustered state trajectories
noise	for defining and dynamically reassigning noise
filter	for fast filtering of coordinates, order parameters, etc. based on a given state trajectory (i.e. clustering result)

Definition at line 66 of file clustering.cpp.