Clustering::Coring Namespace Reference

functions related to dynamical coring More...

Typedefs
typedef std::map< std::size_t, float >	WTDMap
	store the waiting time distribution for each state with time vs count.

Functions
WTDMap	compute_wtd (std::list< std::size_t > streaks)
	compute the waiting time distribution for single state More...
void	main (boost::program_options::variables_map args)
	controlling function and user interface for boundary corrections More...

Detailed Description

functions related to dynamical coring

This module contains all functions for finding the optimal coring time and dynamical coring. The underlaying principal is to define dynamical cores. In contrast to geometrical cores, this algorithm scales linear with the the number of frames. The idea is to require after a transition to stay at least for a certain time (coring time) in the new state, otherwise the transition is identified as intrastate fluctuation and the frames are are assigned to the previous state. A more in detail discussion can be found in Nagel19.

Function Documentation

compute_wtd()

WTDMap Clustering::Coring::compute_wtd

(

std::list< std::size_t >

streaks

)

compute the waiting time distribution for single state

Parameters

streaks

array with all wainting times

Definition at line 41 of file coring.cpp.

main()

void Clustering::Coring::main

(

boost::program_options::variables_map

args

)

controlling function and user interface for boundary corrections

Parameters

states	single column file with state information.
windows	double column file with states and their coring time
distribution	generate and write waiting time distributions to file.
output	file name to store resulting trajectory.
concat-nframes	no. of frames per trajectory.
concat-limits	length of concated trajectories.
cores	file name to store resulting cores.

Returns

void

Definition at line 61 of file coring.cpp.