Here is a list of all documented namespace members with links to the namespaces they belong to:

- a -

• append_commentsMap() : Clustering::Tools
• assign_low_density_frames() : Clustering::Density

- b -

• Box : Clustering::Density
• BOX_DIFF : Clustering::Density
• boxlimits() : Clustering::Tools

- c -

• calculate_free_energies() : Clustering::Density
• calculate_populations() : Clustering::Density , Clustering::Density::MPI , Clustering::Density::OpenCL
• check_concat_limits() : Clustering::Tools
• compare2DVector() : Clustering::Density
• compute_box_grid() : Clustering::Density
• compute_sigma2() : Clustering::Density
• compute_wtd() : Clustering::Coring
• CounterClustMap : Clustering::Noise

- d -

• debug() : Clustering
• devnull : Clustering
• dim1_sorted_coords() : Clustering::Tools

- f -

• fixed_metastability_clustering() : Clustering::MPP
• free_coords() : Clustering::Tools
• FreeEnergy : Clustering::Density

- h -

• has2digits() : Clustering::Density
• high_density_neighborhood() : Clustering::Density , Clustering::Density::MPI

- i -

• is_valid_box() : Clustering::Density

- l -

• logger() : Clustering
• lump_initial_clusters() : Clustering::Density
• lumped_trajectory() : Clustering::MPP

- m -

• main() : Clustering::Coring , Clustering::Density , Clustering::Density::MPI , Clustering::Filter , Clustering::MPP , Clustering::NetworkBuilder , Clustering::Noise
• MAIN_PROCESS : Clustering::Density::MPI
• microstate_min_free_energy() : Clustering::MPP
• microstate_populations() : Clustering::MPP , Clustering::Tools
• min_max_box() : Clustering::Tools
• min_multiplicator() : Clustering::Tools
• most_probable_path() : Clustering::MPP

- n -

• N_NEIGHBOR_BOXES : Clustering::Density
• nearest_neighbors() : Clustering::Density::MPI , Clustering::Density
• Neighbor : Clustering::Density , Clustering::Tools
• neighbor_box() : Clustering::Density
• Neighborhood : Clustering::Density , Clustering::MPP , Clustering::Tools
• normalized_cluster_names() : Clustering::Density

- p -

• path_sinks() : Clustering::MPP
• prepare_initial_clustering() : Clustering::Density

- r -

• read_clustered_trajectory() : Clustering::Tools
• read_comments() : Clustering::Tools
• read_concat_limits() : Clustering::Tools
• read_coords() : Clustering::Tools
• read_free_energies() : Clustering::Tools
• read_neighborhood() : Clustering::Tools
• read_next_float() : Clustering::Tools
• read_single_column() : Clustering::Tools
• read_transition_probabilities() : Clustering::MPP
• row_normalized_transition_probabilities() : Clustering::MPP

- s -

• screening() : Clustering::Density
• screening_log() : Clustering::Density
• single_step_future_state() : Clustering::MPP
• sorted_cluster_names() : Clustering::Density
• sorted_free_energies() : Clustering::Density
• SparseMatrixF : Clustering::MPP
• string_to_num() : Clustering::Tools
• stringprintf() : Clustering::Tools

- t -

• transition_counts() : Clustering::MPP
• triangular_load_balance() : Clustering::Density::MPI::anonymous_namespace{density_clustering_mpi.cpp}

- u -

• unique_elements() : Clustering::Tools
• updated_transition_probabilities() : Clustering::MPP

- v -

• verbose : Clustering

- w -

• weighted_transition_counts() : Clustering::MPP
• write_clustered_trajectory() : Clustering::Tools
• write_fes() : Clustering::Tools
• write_map() : Clustering::Tools
• write_neighborhood() : Clustering::Tools
• write_pops() : Clustering::Tools
• write_single_column() : Clustering::Tools
• WTDMap : Clustering::Coring